| Sequencing techniques that probe the 3D organization of the genome generate large amounts of data whose processing, analysis and visualization is challenging. Here, we present scHiCExplorer, a set of tools for the analysis and visualization of single-cell chromosome conformation data. scHiCExplorer facilitates the creation of contact matrices, correction of contacts, merging, reordering or chromosomes, dimension reduction and clustering of cells. Repository-Maintainer: Joachim Wolff https://github.com/joachimwolff/schicexplorer |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schicclustersvl
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| clusters single-cell Hi-C interaction matrices with svl dimension reduction | 4.1 | 22.05 | |