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Repository seq_length
Name: seq_length
Owner: peterjc
Synopsis: Compute sequence length (from FASTA, QUAL, FASTQ, SFF, etc)
Using Biopython's SeqIO library, this generates a table of sequence lengths
(one line per sequence), from which you can then compute a histogram, or
filter by length, etc.
Content homepage: https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_length
Development repository: https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_length
Link to this repository: https://toolshed.g2.bx.psu.edu/view/peterjc/seq_length/ea3c01e08251
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/seq_length
Type: unrestricted
Revision: 5:ea3c01e08251
This revision can be installed: True
Times cloned / installed: 286

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
from FASTA, QUAL, FASTQ, or SFF file 0.0.5 16.01

Categories
Fasta Manipulation - Tools for manipulating fasta data
Fastq Manipulation - Tools for manipulating fastq data
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis