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Repository coverage_stats
Name: coverage_stats
Owner: peterjc
Synopsis: BAM coverage statistics using samtools idxstats and depth
This tool runs the commands ``samtools idxstats`` and ``samtools depth`` from
the SAMtools toolkit, and parses their output to produce a consise summary of
the coverage information for each reference sequence.
Content homepage: https://github.com/peterjc/pico_galaxy/tree/master/tools/coverage_stats
Development repository: https://github.com/peterjc/pico_galaxy/tree/master/tools/coverage_stats
Link to this repository: https://toolshed.g2.bx.psu.edu/view/peterjc/coverage_stats/ed501717f6cd
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/coverage_stats
Type: unrestricted
Revision: 4:ed501717f6cd
This revision can be installed: True
Times cloned / installed: 886

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
using samtools idxstats and depth 0.1.0 16.01

Categories
Assembly - Tools for working with assemblies
SAM - Tools for manipulating alignments in the SAM format