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Repository nonpareil
Name: nonpareil
Owner: iuc
Synopsis: Estimate average coverage in metagenomic datasets
Nonpareil uses the redundancy of the reads in metagenomic datasets to estimate the average 
coverage and predict the amount of sequences that will be required to achieve "nearly complete coverage".
Content homepage: http://nonpareil.readthedocs.io
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/nonpareil
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/nonpareil/ed85107b3cfd
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/nonpareil
Type: unrestricted
Revision: 4:ed85107b3cfd
This revision can be installed: True
Times cloned / installed: 694

Repository README files - may contain important installation or license information

Readme files

Nonpareil memory usage

By default, this tool is configured to limit the memory consumption to 1024 Mib.

Ideally, this value should be larger than the sequences to analyze (discarding non-sequence elements like headers or quality). This is particularly important when running in multiple cores. This value is approximated. Maximum value in this version: 4194303.

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
to estimate average coverage and generate Nonpareil curves 3.5.5+galaxy1 21.01

Categories
Metagenomics - Tools enabling the study of metagenomes