Repository package_tophat_2_1_0
Name: package_tophat_2_1_0
Owner: iuc
Synopsis: Contains a tool dependency definition that downloads and compiles version 2.1.0 of TopHat.
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads
to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie,
and then analyzes the mapping results to identify splice junctions between exons. 

http://ccb.jhu.edu/software/tophat/index.shtml
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/package_tophat_2_1_0/ed92d4c8e7f6
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/package_tophat_2_1_0
Type: tool_dependency_definition
Revision: 0:ed92d4c8e7f6
This revision can be installed: True
Times cloned / installed: 1190
Dependencies of this repository

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
tophat 2.1.0 package

Categories
Tool Dependency Packages - Repositories that contain third-party tool dependency package installation definitions