| khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name. The official repository is at https://github.com/ged-lab/khmer and you can read the docs online here: http://khmer.readthedocs.org/ There are two mailing lists dedicated to khmer, an announcements-only list and a discussion list. To search their archives and sign-up for them, please visit the following URLs: Discussion http://lists.idyll.org/listinfo/khmer Announcements http://lists.idyll.org/listinfo/khmer-announce |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/khmer_normalize_by_median
| Name | Version | Type | |
|---|---|---|---|
| bz2file | 0.98 | package | |
| khmer | 2.0 | package | |
| screed | 0.9 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Filter reads using digital normalization via k-mer abundances | 2.0.0 | any | |