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Repository blastx_to_scaffold

Name: blastx_to_scaffold

Owner: artbio

Synopsis: Generate DNA scaffold from blastx alignment of Contigs

Detailed description:

This tool start from DNA contigs that aligned to a subject protein sequence through blastx.
The contigs must be provided in fasta format. The blastx output must be tabular, the 12 standard column plus column 13 with the length of the blastx subject.
The final scaffold is a DNA sequence.
Sequences of the subject protein which were not aligned to the contigs are replaced by Ns in this scaffold.

Content homepage: http://artbio.fr

Development repository: https://github.com/ARTbio/tools-artbio/tree/main/tools/blastx_to_scaffold

Link to this repository: https://toolshed.g2.bx.psu.edu/view/artbio/blastx_to_scaffold/f03154ac4ed8

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/artbio/blastx_to_scaffold

Type: unrestricted

Revision: 2:f03154ac4ed8

This revision can be installed: True

Times cloned / installed: 230

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
blastx_to_scaffold View tool metadata	Generate DNA scaffold from blastx alignment of Contigs	1.1.1	16.01