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Repository scanpy_find_markers
Name: scanpy_find_markers
Owner: ebi-gxa
Synopsis: Wrapper for the scanpy-scripts tool suite: Scanpy FindMarkers
Scanpy is a scalable toolkit for analyzing single-cell gene expression data.  It includes
preprocessing, visualization, clustering, pseudotime and trajectory inference and differential
expression testing. Scanpy-scripts provides a set of command-line wrapper scripts that are
composed from Scanpy API for easy execution of common analysis.
Content homepage: https://scanpy.readthedocs.io
Development repository: https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_find_markers/f04dd4e5b6a7
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers
Type: unrestricted
Revision: 17:f04dd4e5b6a7
This revision can be installed: True
Times cloned / installed: 1584

Contents of this repository

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Name Description Version Minimum Galaxy Version
to find differentially expressed genes between groups 1.6.0+galaxy3 18.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
RNA - Utilities for RNA