Repository suite_mirdeep_2_0
Name: suite_mirdeep_2_0
Owner: rnateam
Synopsis: A suite of tool wrappers for mirDeep2
MiRDeep2 is a software package for identification of novel and known miRNAs in deep sequencing data. Furthermore, it can be used for miRNA expression profiling across samples.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/rnateam/suite_mirdeep_2_0/f140d910a9d1
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/rnateam/suite_mirdeep_2_0
Type: repository_suite_definition
Revision: 1:f140d910a9d1
This revision can be installed: True
Times cloned / installed: 663
Dependencies of this repository

Repository dependencies - The suite of tool wrappers for mirDeep2.
Repository package_perl_5_18 revision 35f117d7396b owned by iuc (prior install required)
Repository package_bowtie_0_12_7 revision 9f9f38617a98 owned by devteam
Repository package_gnu_coreutils_8_25 revision a177f177d42f owned by iuc (prior install required)
Repository package_perl_5_18 revision 35f117d7396b owned by iuc (prior install required)
Repository package_bowtie_0_12_7 revision 9f9f38617a98 owned by devteam
Repository package_vienna_rna_1_8 revision 6757330f89cd owned by iuc
Repository package_perl_pdf_api2_2_023 revision b9b7fadfdb69 owned by iuc
Repository package_perl_5_18 revision 35f117d7396b owned by iuc (prior install required)
Repository package_bowtie_0_12_7 revision 9f9f38617a98 owned by devteam
Repository package_vienna_rna_1_8 revision 6757330f89cd owned by iuc
Repository package_perl_pdf_api2_2_023 revision b9b7fadfdb69 owned by iuc
Repository package_randfold_2_0 revision 53e370639b89 owned by iuc
Repository mirdeep2_quantifier revision 40dc77f3730c owned by rnateam
Repository package_perl_5_18 revision 35f117d7396b owned by iuc (prior install required)
Repository package_perl_5_18 revision 35f117d7396b owned by iuc (prior install required)
Repository package_squid_1_9g revision 020bf06899d1 owned by iuc (prior install required)

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
RNA - Utilities for RNA