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Repository cummerbund
Name: cummerbund
Owner: devteam
Synopsis: Wrapper for the Bioconductor cummeRbund library
Allows for persistent storage, access, exploration, and manipulation
of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting
functions for commonly used visualizations.
Content homepage: https://bioconductor.org/packages/release/bioc/html/cummeRbund.html
Development repository: https://github.com/galaxyproject/tools-devteam/tree/master/tools/cummerbund
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/cummerbund/f3012521ea79
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/cummerbund
Type: unrestricted
Revision: 1:f3012521ea79
This revision can be installed: True
Times cloned / installed: 3491
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_libcurl_7_35 revision 0d934b13250c owned by iuc (prior install required)
Repository package_r_3_1_2 revision 4d2fd1413b56 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_2 revision 5313ca2fbce6 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_cairo_1_12_14 revision cd2ed5717e38 owned by devteam (prior install required)
Repository package_pixman_0_32_4 revision 93cd8e03820c owned by devteam (prior install required)
Repository package_freetype_2_5_2 revision a65217367e4a owned by devteam (prior install required)
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_pixman_0_32_4 revision 93cd8e03820c owned by devteam (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_freetype_2_5_2 revision a65217367e4a owned by devteam (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_libxml2_2_9_1 revision 45b16a3ab504 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
R 3.1.2 package
cummeRbund 2.8.2 package
CUMMERBUND_SCRIPT_PATH set_environment

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
data with cummeRbund 1.0.0 any

Categories
RNA - Utilities for RNA
Visualization - Tools for visualizing data