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Repository vcfprimers
Name: vcfprimers
Owner: anton
Synopsis: Extract flanking sequences for each VCF record
For each VCF record, extract the flanking sequences, and write them to stdout as FASTA                                                                                             
records suitable for alignment.  This tool is intended for use in designing validation                                                                                             
experiments.  Primers extracted which would flank all of the alleles at multi-allelic                                                                                              
sites.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/anton/vcfprimers/f3243301d74f
Type: unrestricted
Revision: 3:f3243301d74f
This revision can be installed: True
Times cloned / installed: 232
Dependencies of this repository

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Repository package_vcflib_8a5602bf07 revision bffe0495cd92 owned by anton

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Name Version Type
vcflib 8a5602bf07 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
Extract flanking sequences for each VCF record 0.0.2 any

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis