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Repository cfsan_snp_pipeline_snp_matrix

Name: cfsan_snp_pipeline_snp_matrix

Owner: greg

Synopsis: Create the SNP matrix containing the consensus base for each of the samples at the positions where high-confidence SNPs were found in any of the samples.

Detailed description:

Create the SNP matrix containing the consensus base for each of the samples at
  the positions where high-confidence SNPs were found in any of the samples.
long_description: Create the SNP matrix containing the consensus base for each of the samples at
  the positions where high-confidence SNPs were found in any of the samples. The
  matrix contains one row per sample and one column per SNP position. Non-SNP
  positions are not included in the matrix. The matrix is formatted as a fasta
  file, with each sequence (all of identical length) corresponding to the SNPs
  in the correspondingly named sequence.

Content homepage: https://github.com/gregvonkuster/galaxy_tools

Development repository: https://github.com/gregvonkuster/galaxy_tools/tree/master/snp_pipeline/cfsan_snp_pipeline_snp_matrix

Link to this repository: https://toolshed.g2.bx.psu.edu/view/greg/cfsan_snp_pipeline_snp_matrix/f959d99d1758

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/greg/cfsan_snp_pipeline_snp_matrix

Type: unrestricted

Revision: 3:f959d99d1758

This revision can be installed: True

Times cloned / installed: 95