This repository has been marked as deprecated, so some tool shed features may be restricted.
Repository mimodd_coverage_stats
Name: mimodd_coverage_stats
Owner: wolma
Synopsis: use MiModD to obtain a coverage report for a bcf file generated with mimodd_variant_calling
install this tool from the suite_mimodd_0_1_5 repository
Link to this repository: https://toolshed.g2.bx.psu.edu/view/wolma/mimodd_coverage_stats/fa6c970d07d7
Type: unrestricted
Revision: 1:fa6c970d07d7
This revision can be installed: True
Times cloned / installed: 8
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_zlib_1_2_8 revision dce22a65bac2 owned by wolma (prior install required)
Repository package_python3_zlib_dependent_1_0 revision 34b2ffc538de owned by wolma (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
mimodd 0.1.5 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Calculate coverage statistics for a BCF file as generated by the Variant Calling tool 1.0.0 any

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA