| The MEME Suite supports motif-based analysis of DNA, RNA and protein sequences. It provides motif discovery algorithms using both probabilistic (MEME) and discrete models (MEME), which have complementary strengths. It also allows discovery of motifs with arbitrary insertions and deletions (GLAM2). In addition to motif discovery, the MEME Suite provides tools for scanning sequences for matches to motifs (FIMO, MAST and GLAM2Scan), scanning for clusters of motifs (MCAST), comparing motifs to known motifs (Tomtom), finding preferred spacings between motifs (SpaMo), predicting the biological roles of motifs (GOMo), measuring the positional enrichment of sequences for known motifs (CentriMo), and analyzing ChIP-seq and other large datasets (MEME-ChIP). The MEME Suite is comprised of a collection of tools that work together. |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo
| Repository package_imagemagick_6_9_3 revision 942ae5bafee3 owned by iuc (prior install required) |
| Repository package_libxslt_1_1_28 revision 18e2e2ef0f08 owned by iuc (prior install required) |
| Repository package_perl_xml_parser_expat_2_41 revision 5d17b1a12107 owned by iuc (prior install required) |
| Repository package_libxml2_2_9_3 revision 24131daaf69f owned by iuc (prior install required) |
| Repository package_perl_5_18 revision 35f117d7396b owned by iuc (prior install required) |
| Repository package_gnu_coreutils_8_25 revision a177f177d42f owned by iuc (prior install required) |
| Name | Version | Type | |
|---|---|---|---|
| meme | 4.11.0 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| - Scan a set of sequences for motifs. | 4.11.0.0 | any | |