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Repository sina
Name: sina
Owner: iuc
Synopsis: SINA reference based multiple sequence alignment
SINA aligns nucleotide sequences to match a pre-existing MSA using a graph based alignment algorithm similar to PoA. The graph approach allows SINA to incorporate information from many reference sequences building without blurring highly variable regions. While pure NAST implementations depend highly on finding a good match in the reference database, SINA is able to align sequences relatively distant to references with good quality and will yield a robust result for query sequences with many close reference.
Content homepage: https://sina.readthedocs.io/en/latest/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/sina
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/sina/fd62f1b940f6
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/sina
Type: unrestricted
Revision: 1:fd62f1b940f6
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Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
reference based multiple sequence alignment 1.5.0+galaxy0 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis