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Repository slamdunk
Name: slamdunk
Owner: iuc
Synopsis: Slamdunk maps and quantifies SLAMseq reads
Slamdunk maps SLAMseq reads, resolves multimappers and quantifies the fraction of labeled and unlabeled reads within samples as well as provides diagnostics plots
Content homepage: http://t-neumann.github.io/slamdunk
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/slamdunk
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/slamdunk/fe3fe68b09a7
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/slamdunk
Type: unrestricted
Revision: 4:fe3fe68b09a7
This revision can be installed: True
Times cloned / installed: 449

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
- post-processing and QC of Slamdunk analyses 0.3.3 16.01
- streamlining SLAM-seq analysis with ultra-high sensitivity 0.3.3+galaxy2 16.01

Categories
RNA - Utilities for RNA
Transcriptomics - Tools for use in the study of Transcriptomics.
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data