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Repository scanpy_integrate_mnn
Name: scanpy_integrate_mnn
Owner: ebi-gxa
Synopsis: Wrapper for the scanpy-scripts tool suite: Scanpy MNN
Scanpy is a scalable toolkit for analyzing single-cell gene expression data.  It includes
preprocessing, visualization, clustering, pseudotime and trajectory inference and differential
expression testing. Scanpy-scripts provides a set of command-line wrapper scripts that are
composed from Scanpy API for easy execution of common analysis.
Content homepage: https://scanpy.readthedocs.io
Development repository: https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy
Link to this repository: https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_integrate_mnn/ff6decc0f432
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_integrate_mnn
Type: unrestricted
Revision: 14:ff6decc0f432
This revision can be installed: True
Times cloned / installed: 673

Contents of this repository

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Name Description Version Minimum Galaxy Version
correct batch effects by matching mutual nearest neighbors 1.9.3+galaxy0 20.09