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Repository data_manager_humann2_database_downloader

Name: data_manager_humann2_database_downloader

Owner: iuc

Synopsis: HUMAnN2 for functionally profiling metagenomes and metatranscriptomes at species-level resolution

Detailed description:

HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways
in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads).
This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community
and its members. More generally, functional profiling answers the question "What are the microbes in my community-of-interest
doing (or capable of doing)?"

Content homepage: http://huttenhower.sph.harvard.edu/humann2

Development repository: https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_humann2_database_downloader

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_humann2_database_downloader/ff9cf22838d4

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/data_manager_humann2_database_downloader

Type: unrestricted

Revision: 5:ff9cf22838d4

This revision can be installed: True

Times cloned / installed: 2015

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
HUMAnN2 download View tool metadata	Download HUMAnN2 database	0.11.1.0	16.01

Data Managers
Name	Version	Data Tables
data_manager_humann2_download	0.0.1	humann2_nucleotide_database, humann2_protein_database

Data Managers

Name

Version

Data Tables

data_manager_humann2_download

0.0.1

humann2_nucleotide_database, humann2_protein_database