| profrep |
hg clone https://toolshed.g2.bx.psu.edu/repos/petr-novak/profrep
| Repository package_profrep_databases_1_0 revision e7744e56a5dc owned by petr-novak (prior install required) |
| Name | Version | Type | |
|---|---|---|---|
| profrep_databases | 1.0 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Tool for annotation of transposable elements based on the similarity to conserved protein domains database. | 1.0.0 | 16.01 | |
| Tool for filtering of gff3 output from DANTE. Filtering can be performed based domain type and alignment quality. | 1.0.0 | 16.01 | |
| Tool to extract nucleotide sequences of protein domains found by DANTE | 1.0.0 | 16.01 | |
| Extract data for ProfRep from RepaetExplorer | 1.0.0 | 16.01 | |
| Tool to select a specific sequence region from a GFF file | 1.0.0 | 16.01 | |
| Tool to identify and visualize general repetive profile of a sequence as well as assign repetitive regions to a class from database of repeats | 1.0.0 | 16.01 | |
| Tool to reduce database of reads sequences based on their similarities to speed up ProfRep | 1.0.0 | 16.01 | |
| Tool to mask repetitive regions of original DNA seq based on the repeat regions reported by ProfRep | 1.0.0 | 16.01 | |
| Tool to polish the raw ProfRep output in order to evaluate overlapping regions of different classifications and to interconnect fragmented parts of individual repeats, optionally supported by domains information | 1.0.0 | 16.01 | |