Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository gotohscan
Name: gotohscan
Owner: rnateam
Synopsis: Find subsequences in db
The GotohScan program is a search tool that finds shorter sequences
(usually genes) in large database sequences (chromosomes, genomes, ..)
by computing all semi-global alignments.  Thus, the query sequence is
never truncated or split into subsequences, but always mapped to the
database over its complete length. The alignment is computed via the
Gotoh-alignment algorithm using affine gap costs.
Development repository: https://github.com/bgruening/galaxytools/tree/master/tools/gotohscan
Link to this repository: https://toolshed.g2.bx.psu.edu/view/rnateam/gotohscan/c172fed9eb75
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/rnateam/gotohscan
Type: unrestricted
Revision: 1:c172fed9eb75
This revision can be installed: True
Times cloned / installed: 1664

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Find subsequences in db 1.3.0 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis