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Repository featurecounts
Name: featurecounts
Owner: yhoogstrate
Synopsis: featureCounts counts the number of reads aligned to defined masked regions in a reference genome
edit: please use featureCounts wrapper from IUC which is continuously maintained.

Counts reads aligned to annotated genes in a reference genome from SAM or BAM files.
Content homepage: http://bioinf.wehi.edu.au/featureCounts
Development repository: https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper
Link to this repository: https://toolshed.g2.bx.psu.edu/view/yhoogstrate/featurecounts/e04fbcc4e91a
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/yhoogstrate/featurecounts
Type: unrestricted
Revision: 3:e04fbcc4e91a
This revision can be installed: True
Times cloned / installed: 546
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_featurecounts_1_4_6_p5 revision 600e51134f8d owned by yhoogstrate

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
featurecounts 1.4.6.p5 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
Measure gene expression in RNA-Seq experiments from SAM or BAM files. 1.4.6.p5 any

Categories
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data
Transcriptomics - Tools for use in the study of Transcriptomics.