Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository ctat_genome_resource_libs_data_manager
Owner: trinity_ctat
Synopsis: Download, build, or set the location of a CTAT Genome Resource Library.
The CTAT Genome Resource Library Data Manager facilitates the download, creation, and/or use of, within a Galaxy instance, CTAT Genome Resource Libraries. Such libraries are used by the ctat_fusion_suite of tools.
There are three basic ways to use this tool.
  1) Download and Build the CTAT Genome Resource Library from the CTAT archive.
  2) Build the library from source data files that are already downloaded.
  3) Specify the location of an already built library.
Any of these methods can incorporate or be followed by a gmap build on the library.
More information about these libraries and how to build them is at:
https://github.com/FusionFilter/FusionFilter/wiki
The libraries downloaded by this tool are at:
https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB

Type: unrestricted
Revision: 1:da7f50809820
This revision can be installed: True
Times cloned / installed: 208

Contents of this repository

Name Description Version Minimum Galaxy Version
Retrieve, and/or specify the location of, a CTAT Genome Resource Library. 2.0.0 16.01

Name Version Data Tables
ctat_genome_resource_libs_data_manager 0.0.1 ctat_genome_resource_libs, ctat_cravat_tissues

Categories
Data Managers - Utilities for Managing Galaxy's built-in data cache
Genome annotation - Tools for annotating genomic information
Metagenomics - Tools enabling the study of metagenomes