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Repository diamond
Name: diamond
Owner: bgruening
Synopsis: DIAMOND is a new alignment tool for aligning short DNA sequencing reads to a protein reference database such as NCBI-NR.
DIAMOND_ is a new alignment tool for aligning short DNA sequencing reads to a protein reference database such as NCBI-NR. On Illumina reads of length 100-150bp, in fast mode, DIAMOND is about 20,000 times faster than BLASTX, while reporting about 80-90% of all matches that BLASTX finds, with an e-value of at most 1e-5. In sensitive mode, DIAMOND ist about 2,500 times faster than BLASTX, finding more than 94% of all matches. http://ab.inf.uni-tuebingen.de/software/diamond/
Content homepage: https://github.com/bbuchfink/diamond
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/diamond
Link to this repository: https://toolshed.g2.bx.psu.edu/view/bgruening/diamond/60f307965815
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/diamond
Type: unrestricted
Revision: 12:60f307965815
This revision can be installed: True
Times cloned / installed: 2973

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
alignment tool for short sequences against a protein database 2.1.11+galaxy0 23.2
Build database from a FASTA file 2.1.11+galaxy0 23.2
generate formatted output from DAA files 2.1.11+galaxy0 23.2

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Metagenomics - Tools enabling the study of metagenomes