Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository diamond
Name: diamond
Owner: bgruening
Synopsis: DIAMOND is a new alignment tool for aligning short DNA sequencing reads to a protein reference database such as NCBI-NR.
DIAMOND_ is a new alignment tool for aligning short DNA sequencing reads to a protein reference database such as NCBI-NR. On Illumina reads of length 100-150bp, in fast mode, DIAMOND is about 20,000 times faster than BLASTX, while reporting about 80-90% of all matches that BLASTX finds, with an e-value of at most 1e-5. In sensitive mode, DIAMOND ist about 2,500 times faster than BLASTX, finding more than 94% of all matches. http://ab.inf.uni-tuebingen.de/software/diamond/
Content homepage: https://github.com/bbuchfink/diamond
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/diamond
Link to this repository: https://toolshed.g2.bx.psu.edu/view/bgruening/diamond/e8ac2b53f262
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/diamond
Type: unrestricted
Revision: 11:e8ac2b53f262
This revision can be installed: True
Times cloned / installed: 2896

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
generate formatted output from DAA files 2.0.15+galaxy0 19.01
Build database from a FASTA file 2.0.15+galaxy0 19.01
alignment tool for short sequences against a protein database 2.0.15+galaxy0 19.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Metagenomics - Tools enabling the study of metagenomes