Repository rmarkdown_bdss_client
Name: rmarkdown_bdss_client
Owner: mingchen0919
Synopsis: R Markdown based bdss_client wrapper
Download and extract reads in fastq/fasta format from NCBI SRA with the Big Data Smmrt Socket (BDSS) client and output a list or list:paired dataset collection.
Development repository: https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_bdss_client_main
Link to this repository: https://toolshed.g2.bx.psu.edu/view/mingchen0919/rmarkdown_bdss_client/512d008295db
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/mingchen0919/rmarkdown_bdss_client
Type: unrestricted
Revision: 0:512d008295db
This revision can be installed: True
Times cloned / installed: 117

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Download data with BDSS client. 1.0.3 16.01
Download data with BDSS client and generate list (single end SRA data) and list:paired dataset collection (paired end SRA data). 1.0.3 16.01

Categories
Data Source - Tools for retrieving data from external data sources
Fastq Manipulation - Tools for manipulating fastq data