Galaxy |

Repository revision

Repository lofreq_viterbi

Name: lofreq_viterbi

Owner: iuc

Synopsis: Realign reads with LoFreq in Galaxy.

Detailed description:

LoFreq is a fast and sensitive variant-caller for inferring SNVs and indels
from next-generation sequencing data. It makes full use of base-call qualities
and other sources of errors inherent in sequencing (e.g. mapping or base/indel
alignment uncertainty), which are usually ignored by other methods or only
used for filtering.

Content homepage: https://csb5.github.io/lofreq/

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/lofreq

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/lofreq_viterbi/aa35ee7f3ab2

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/lofreq_viterbi

Type: unrestricted

Revision: 5:aa35ee7f3ab2

This revision can be installed: True

Times cloned / installed: 3202