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Repository msnbase_readmsdata
Name: msnbase_readmsdata
Owner: lecorguille
Synopsis: [Metabolomics][W4M][LC-MS] MSnbase R Package - Preprocessing - Imports Mass-Spectrometry Data Files
Reads XML-based mass-spectrometry data files.  Can be chained with the W4M
xcms.findChromPeaks tool
Part of the W4M project: http://workflow4metabolomics.org
XCMS: http://www.bioconductor.org/packages/release/bioc/html/xcms.html 
Content homepage: https://github.com/sneumann/xcms
Development repository: https://github.com/workflow4metabolomics/tools-metabolomics/
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/lecorguille/msnbase_readmsdata/11ab2081bd4a
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/lecorguille/msnbase_readmsdata
Type: unrestricted
Revision: 14:11ab2081bd4a
This revision can be installed: True
Times cloned / installed: 1066

Repository README files - may contain important installation or license information

Readme files
Changelog/News -------------- .. _News: https://lgatto.github.io/MSnbase/news/index.html **Version 2.16.1+galaxy0 - 08/04/2019** - UPGRADE: upgrade the MSnbase version from 2.8.2 to 2.16.1 (see MSnbase News_). Almost all the new features may not concern our usage of MSnbase. **Version 2.8.2.1 - 30/04/2019** - BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms. **Version 2.8.2.0 - 08/04/2019** - UPGRADE: upgrade the MSnbase version from 2.4.0 to 2.8.2 (see MSnbase News_). Almost all the new features may not concern our usage of MSnbase. **Version 2.4.0.0 - 29/03/2018** - NEW: a new dedicated tool to read the raw data. This function was previously included in xcms.findChromPeaks. This way, you will now be able to display TICs and BPCs before xcms.findChromPeaks.
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository no_unzip_datatype revision 7800ba9a4c1e owned by lecorguille
Repository rdata_xcms_datatypes revision 544f6d2329ac owned by lecorguille

Contents of this repository

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Name Description Version Minimum Galaxy Version
Imports mass-spectrometry data files 2.16.1+galaxy0 16.01

Categories
Metabolomics - Tools for use in the study of Metabolomics