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Repository chado_phylogeny_load_tree
Owner: gga
Synopsis: Chado load trees (from the Chado tool suite)
Galaxy tools allowing to load data into a remote Chado database.

Chado is a member of the GMOD family of tools.

https://github.com/galaxy-genome-annotation/python-chado
Type: unrestricted
Revision: 24:4dab0f255b74
This revision can be installed: True
Times cloned / installed: 945

Repository README files - may contain important installation or license information

Galaxy-chado

Galaxy tools to interface with Tripal using python-chado

Dependencies

You will need to install some python modules in the Galaxy virtualenv for these tools to be fully functional:

. /path/to/galaxy/.venv/bin/activate
pip install future chado
deactivate

Environment

The following environment variables must be set:

ENV Use
$GALAXY_CHADO_DBHOST Host of the Chado database
$GALAXY_CHADO_DBNAME Name of the Chado database
$GALAXY_CHADO_DBUSER Username to connect to the database
$GALAXY_CHADO_DBPASS Password to connect to the database
$GALAXY_CHADO_DBSCHEMA Database schema.
$GALAXY_CHADO_DBPORT Port of the Chado database

License

All python scripts and wrappers are licensed under MIT license.

Contents of this repository

Name Description Version Minimum Galaxy Version
for phylogeny module 2.3.9+galaxy0 16.01

Categories
Web Services - Tools enabling access to web services