Repository smalt_index
Name: smalt_index
Owner: nml
Synopsis: SMALT aligns DNA sequencing reads with a reference genome.
SMALT employs a hash index of short words up to 20 nucleotides long and sampled at equidistant steps along the reference genome. For each sequencing read, potentially matching segments in the reference genome are identified from seed matches in the index and subsequently aligned with the read using dynamic programming.
Content homepage: http://www.sanger.ac.uk/science/tools/smalt-0
Development repository: https://sourceforge.net/projects/smalt/
Link to this repository: https://toolshed.g2.bx.psu.edu/view/nml/smalt_index/4b79af35baf9
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/nml/smalt_index
Type: unrestricted
Revision: 0:4b79af35baf9
This revision can be installed: True
Times cloned / installed: 256

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Index a reference 1.2.0 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis