| GEMINI (GEnome MINIng) is designed to be a flexible framework for exploring genetic variation in the context of the wealth of genome annotations available for the human genome. By placing genetic variants, sample genotypes, and useful genome annotations into an integrated database framework, GEMINI provides a simple, flexible, yet very powerful system for exploring genetic variation for for disease and population genetics. Using the GEMINI framework begins by loading a VCF file into a database. Each variant is automatically annotated by comparing it to several genome annotations from source such as ENCODE tracks, UCSC tracks, OMIM, dbSNP, KEGG, and HPRD. All of this information is stored in portable SQLite database that allows one to explore and interpret both coding and non-coding variation using “off-the-shelf” tools or an enhanced SQL engine. Repository-Maintainer: Björn Grüning Repository-Development: https://github.com/bgruening/galaxytools/ |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/package_gemini_0_10_0
| Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required) |
| Repository package_grabix_0_1_3 revision 0714d88bd854 owned by iuc (prior install required) |
| Repository package_tabix_0_2_6 revision 389d2376b60b owned by iuc (prior install required) |
| Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam (prior install required) |
| Repository package_bedtools_2_19 revision fb3a854c7104 owned by iuc (prior install required) |
| Name | Version | Type | |
|---|---|---|---|
| bedtools | 2.19.1 | package | |
| gemini | 0.10.0 | package | |
| grabix | 0.1.3 | package | |
| samtools | 0.1.19 | package | |
| tabix | 0.2.6 | package | |
| zlib | 1.2.8 | package | |