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Repository duplex
Name: duplex
Owner: nick
Synopsis: Du Novo: A pipeline for processing duplex sequencing data.
Process raw duplex reads into duplex consensus reads without the use of a reference sequence.
Published in Genome Biology as Stoler et al. 2016: http://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1039-4
Content homepage: https://github.com/galaxyproject/dunovo
Development repository: https://github.com/galaxyproject/dunovo
Link to this repository: https://toolshed.g2.bx.psu.edu/view/nick/duplex/9a0bee12b583
Type: unrestricted
Revision: 6:9a0bee12b583
This revision can be installed: True
Times cloned / installed: 108
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)
Repository package_bowtie2_2_1_0 revision 017a00c265f1 owned by devteam
Repository package_samtools_0_1_18 revision 1409782220c9 owned by iuc
Repository mafft revision 15974dd17515 owned by rnateam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bowtie2 2.1.0 package
duplex 0.6 package
mafft 7.221 package
networkx 1.9 package
samtools 0.1.18 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
of duplex sequencing reads 0.6 any
from duplex sequencing alignments 0.6 any
of duplex sequencing reads 0.6 any
of duplex sequencing reads 0.6 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis