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Repository data_manager_build_kraken2_database

Name: data_manager_build_kraken2_database

Owner: iuc

Synopsis: Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.

Detailed description:

Kraken2 is a system for assigning taxonomic labels to short DNA
sequences, usually obtained through metagenomic studies. Previous attempts by other
bioinformatics software to accomplish this task have often used sequence alignment
or machine learning techniques that were quite slow, leading to the development
of less sensitive but much faster abundance estimation programs. Kraken aims to
achieve high sensitivity and high speed by utilizing exact alignments of k-mers
and a novel classification algorithm.

Content homepage: https://github.com/dfornika/galaxytools/

Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_build_kraken2_database

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_build_kraken2_database/4877dfefaacc

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/data_manager_build_kraken2_database

Type: unrestricted

Revision: 17:4877dfefaacc

This revision can be installed: True

Times cloned / installed: 1647