Repository voom_rnaseq
Name: voom_rnaseq
Owner: shians
Synopsis: Perform RNA-Seq differential expression analysis using limma voom pipeline
Apply limma voom pipeline on a table of tab separated count data to generate HTML report for differential expression analysis. Report includes mean-variance trend, MDS and smear plots as well as summarised table of statistics on each gene.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/shians/voom_rnaseq/b2fe55fd0651
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/shians/voom_rnaseq
Type: unrestricted
Revision: 1:b2fe55fd0651
This revision can be installed: True
Times cloned / installed: 374

Contents of this repository

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Name Description Version Minimum Galaxy Version
Perform differential expression analysis using pipeline based on the voom function of the limma bioconductor package. This tool takes a count matrix (tab separated) as input and produces a HTML report as output. 1.1.0 any

Categories
RNA - Utilities for RNA
Statistics - Tools for generating statistics
Visualization - Tools for visualizing data