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Repository refeditor
Name: refeditor
Owner: superyuan
Synopsis: Reference Genome Editor
Produces a personalized diploid reference genome based on all known genetic variants of that particular individual.  Covert the intermediate mapping results for diploid reference genome back to results for haploid reference genome.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/superyuan/refeditor/85bdf226b67b
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/superyuan/refeditor
Type: unrestricted
Revision: 1:85bdf226b67b
This revision can be installed: True
Times cloned / installed: 185

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Converts intermediate SAM file to final SAM file 1.0.1 any
Extracts genotypes for a particular individual from VCF File 1.0.1 any
Constructs Diploid Reference Genome 1.0.1 any

Categories
Fasta Manipulation - Tools for manipulating fasta data
SAM - Tools for manipulating alignments in the SAM format