Repository getindelrates_3way
Name: getindelrates_3way
Owner: devteam
Synopsis: Estimate Indel Rates for 3-way alignments
This tool estimates the insertion and deletion rates for alignments
in a window of specified size. Rates are computed over the total adjusted lengths
(adjusted by disregarding masked bases) of all the alignments blocks from the indel
file that fall within that window.
Development repository: https://github.com/galaxyproject/tools-devteam/tree/master/tools/getindelrates_3way
Link to this repository: https://toolshed.g2.bx.psu.edu/view/devteam/getindelrates_3way/d427e5acb9ee
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/getindelrates_3way
Type: unrestricted
Revision: 0:d427e5acb9ee
This revision can be installed: True
Times cloned / installed: 2356
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_bx_python_0_7 revision 2d0c08728bca owned by devteam
Repository package_galaxy_ops_1_0_0 revision eef263ff9b95 owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bx-python 0.7.1 package
galaxy-ops 1.0.0 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
for 3-way alignments 1.0.0 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA