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Repository pathogist
Name: pathogist
Owner: matnguyen
Synopsis: Calibrated multi-criterion genomic analysis for public health microbiology
TBA
Development repository: https://github.com/WGS-TB/PathOGiST
Link to this repository: https://toolshed.g2.bx.psu.edu/view/matnguyen/pathogist/728c6b81b45e
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/matnguyen/pathogist
Type: unrestricted
Revision: 9:728c6b81b45e
This revision can be installed: True
Times cloned / installed: 246

Contents of this repository

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Name Description Version Minimum Galaxy Version
: Visualize distance matrix 1.0.0 16.01
: Runs the entire PathOGiST pipeline 1.0.0 16.01
creates a list of accessions and the associated path to their variant calls 1.0.0 16.01
: Creates and populates the config file to run PathOGiST 1.0.0 16.01
: Construct distance matrix from genotyping data 1.0.0 16.01
: Runs correlation clustering on a distance matrix file 1.0.0 16.01
: Performs consensus clustering on multiple clusterings 1.0.0 16.01