|AREsite2 represents an update for AREsite, an on-line resource for the investigation of
AU-rich elements (ARE) in human and mouse mRNA 3’UTR sequences. The new updated and enhanced
version allows detailed investigation of AU, GU and U-rich elements (ARE, GRE, URE) in the
transcriptome of Homo sapiens, Mus musculus, Danio rerio, Caenorhabditis elegans and Drosophila melanogaster.
It contains information on genomic location, genic context, RNA secondary structure context and conservation
of annotated motifs. Improvements include annotation of motifs not only in 3’UTRs but in the whole gene
body including introns, additional genomes, and locally stable secondary structures from genome wide scans.
Furthermore, we include data from CLIP-Seq experiments in order to highlight motifs with validated protein
interaction. Additionally, we provide a REST interface for experienced users to interact with the database
in an semi-automated manner. The database is publicly available at: http://rna.tbi.univie.ac.at/AREsite
hg clone https://toolshed.g2.bx.psu.edu/repos/rnateam/aresite2
|Minimum Galaxy Version
|AREsite2 REST Interface