The UShER toolkit includes a set of tools for for rapid, accurate placement of samples
to existing phylogenies. While not restricted to SARS-CoV-2 phylogenetic analyses, it
has enabled real-time phylogenetic analyses and genomic contact tracing in that its
placement is orders of magnitude faster and more memory-efficient than previous methods.
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/usher_matutils
|Name||Description||Version||Minimum Galaxy Version|
|analyze, edit, and manipulate mutation annotated tree files||0.2.1+galaxy0||20.01|