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* name: python, type: package, version: 2.7.10
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Repository crossmap
Name: crossmap
Owner: yhoogstrate
Synopsis: CrossMap: Convert genome coordinates or annotation files between genome assemblies
----------- DEPRECATED -----------
Please use CrossMap wrapper by IUC
----------------------------------

CrossMap is versatile tool to convert genome coordinates or annotation files between genome
assemblies. It supports mostly commonly used file types, including BAM, BED,BigWig, GFF,
GTF, SAM, Wiggle, and VCF formats. For large plain text file types, such as BED, GFF, GTF
and VCF, reading from remote servers and file compression are supported.

http://crossmap.sourceforge.net/
Content homepage: http://crossmap.sourceforge.net/
Development repository: https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper
Link to this repository: https://toolshed.g2.bx.psu.edu/view/yhoogstrate/crossmap/1efce8a693ca
Type: unrestricted
Revision: 7:1efce8a693ca
This revision can be installed: True
Times cloned / installed: 93
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_nose_1_3_7 revision e0d81eee3c51 owned by yhoogstrate (prior install required)
Repository package_python_2_7_numpy_1_9 revision f24fc0b630fc owned by iuc (prior install required)
Repository package_cython_0_23_1 revision 45abfe2b0cfc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)
Repository package_python_2_7 revision f761bd14343e owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7 revision f761bd14343e owned by iuc (prior install required)
Repository package_ucsc_tools_312 revision 2d6bafd63401 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
crossmap 0.2 package
python 2.7.10 package
ucsc_tools 312 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Convert genome coordinates or annotation files between genome assemblies 0.2.d any

Categories
Convert Formats - Tools for converting data formats
Genomic Interval Operations - Tools for operating on genomic intervals