Converts a BED file (12 column) to a 6 column tabular list of exon locations with columns: name,chrom,start,end,strand,cds_start,cds_end. It relies on the ThickStart and ThckEnd columns of the BED file to define the coding start and end of a protein sequence. The tabular format can be converted to a sqlite table for the quick lookup of the genomic location of any animo acid in the protein sequence. |
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/bed_to_protein_map
Name | Description | Version | Minimum Galaxy Version |
---|---|---|---|
genomic location of proteins for MVP | 0.1.0 | 16.01 |