Repository metaphlan2
Name: metaphlan2
Owner: bebatut
Synopsis: MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution
Content homepage: https://bitbucket.org/biobakery/metaphlan2
Development repository: https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/
Link to this repository: https://toolshed.g2.bx.psu.edu/view/bebatut/metaphlan2/8991e05c44e4
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bebatut/metaphlan2
Type: unrestricted
Revision: 1:8991e05c44e4
This revision can be installed: True
Times cloned / installed: 344
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_numpy_1_9 revision f24fc0b630fc owned by iuc
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)
Repository package_bowtie_2_2_5 revision 30bd7eaeddbf owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bowtie2 2.2.5 package
metaphlan2 2.5.0 package
numpy 1.9 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
output for Krona 2.5.0 any
to profile the composition of microbial communities 2.5.0 any

Categories
Metagenomics - Tools enabling the study of metagenomes