Repository checkm_lineage_set
Owner: iuc
Synopsis: Wrapper for the CheckM tool suite: CheckM lineage_set
CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous and single-copy within a phylogenetic lineage. Assessment of genome quality can also be examined using plots depicting key genomic characteristics (e.g., GC, coding density) which highlight sequences outside the expected distributions of a typical genome. CheckM also provides tools for identifying genome bins that are likely candidates for merging based on marker set compatibility, similarity in genomic characteristics, and proximity within a reference genome tree.
Type: unrestricted
Revision: 1:640400ad260d
This revision can be installed: True
Times cloned / installed: 99

Contents of this repository

Name Description Version Minimum Galaxy Version
Infer lineage-specific marker sets for each bin 1.2.0+galaxy0 21.01

Categories
Metagenomics - Tools enabling the study of metagenomes