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Repository raceid_filtnormconf
Owner: iuc
Synopsis: Wrapper for the RaceID pipeline tool: Initial processing using RaceID
RaceID is a method for cell type identification from single-cell RNA-seq data by unsupervised learning. An initial clustering is followed by an outlier identification based on a backgorund model of combined technical and biological variability in single-cell RNA-seq data obtained by quantification with unique molecular identifiers. StemID permits subsequent inference of a lineage tree based on clusters, i.e. cell types, identified by RaceID.
Type: unrestricted
Revision: 9:b83fbc90161e
This revision can be installed: True
Times cloned / installed: 490

Contents of this repository

Name Description Version Minimum Galaxy Version
performs filtering, normalisation, and confounder removal to generate a normalised and filtered count matrix of single-cell RNA data 0.2.3+galaxy3 21.01

Transcriptomics - Tools for use in the study of Transcriptomics.