Sequence Analysis toolkit provides several small utilities for working with FastA and FastQ data. |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/seqtk
Name | Description | Version | Minimum Galaxy Version |
---|---|---|---|
fastq QC (base/quality summary) | 1.3.1 | 16.01 | |
choose a random base from hets | 1.3.1 | 16.01 | |
common transformation of FASTA/Q | 1.3.3 | 16.01 | |
regional heterozygosity | 1.3.1 | 16.01 | |
trim FASTQ using the Phred algorithm | 1.3.1 | 16.01 | |
random subsample of fasta or fastq sequences | 1.3.2 | 16.01 | |
point mutate FASTA at specified positions | 1.3.1 | 16.01 | |
drop unpaired from interleaved Paired End FASTA/Q | 1.3.1 | 16.01 | |
merge two FASTA/Q files | 1.3.1 | 16.01 | |
extract subsequences from FASTA/Q files | 1.3.1 | 16.01 | |
cut sequence at long N | 1.3.1 | 16.01 | |
interleave two unpaired FASTA/Q files for a paired-end file | 1.3.1 | 16.01 | |
get the nucleotide composition of FASTA/Q | 1.3.1 | 16.01 | |
extract the position of each het | 1.3.1 | 16.01 |