Repository jellyfish
Name: jellyfish
Owner: iuc
Synopsis: Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. Jellyfish can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/jellyfish
Type: unrestricted
Revision: 0:b4038a4d48f5
This revision can be installed: True
Times cloned / installed: 17

Contents of this repository

Name Description Version Minimum Galaxy Version
2.3.0+galaxy0 20.01

Categories
Assembly - Tools for working with assemblies