Repository proteomiqon_peptidedb
Name: proteomiqon_peptidedb
Owner: galaxyp
Synopsis: The tool ProteomIQon PeptideDB creates a peptide database in the SQLite format.
MS-based shotgun proteomics estimates protein abundances using a proxy: peptides. 
An established method to identify acquired MS/MS spectra is the comparison of each spectrum with peptides in a reference database. 
The PeptideDB tool helps to create peptide databases by in silico digestion given proteome information in the FASTA format and a set of parameters that allow the user to mimic
conditions of their specific experiment. The created database stores peptide protein relationships in a SQLite database which can then be supplied to other ProteomIQon tools.
Content homepage: https://csbiology.github.io/ProteomIQon/tools/PeptideDB.html
Development repository: https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/proteomiqon_peptidedb
Link to this repository: https://toolshed.g2.bx.psu.edu/view/galaxyp/proteomiqon_peptidedb/1e5400393797
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/proteomiqon_peptidedb
Type: unrestricted
Revision: 0:1e5400393797
This revision can be installed: True
Times cloned / installed: 126

Contents of this repository

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Name Description Version Minimum Galaxy Version
creates a peptide database in the SQLite format. 0.0.7 20.05

Categories
Proteomics - Tools enabling the study of proteins