| The major allele sequence of a sample is simply the sequence consisting of the most frequent nucleotide per position.
Replacing the major allele for the second most frequent allele at diploid positions generates the minor allele sequence. getalleleseq takes the table generated from the allele-count tool to derive a major and minor allele sequence per sample. Since all sequences share the same length, there is no need to align them. Thus, all major allele sequences are output to a FASTA multiple alignment file. Minor allele sequences are output to independent FASTA files per sample. (boris-at-bx.psu.edu) |
hg clone https://toolshed.g2.bx.psu.edu/repos/boris/getalleleseq
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Generate major and minor allele sequences from alleles table | 0.0.1 | any | |