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Repository phe_samtools_mpileup
Name: phe_samtools_mpileup
Owner: ulfschaefer
Synopsis: samtools mpileup and bcftools call
Uses samtools v1.1 mpileup and bcftools call to make a vcf file.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/ulfschaefer/phe_samtools_mpileup/b13db9e677b4
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ulfschaefer/phe_samtools_mpileup
Type: unrestricted
Revision: 15:b13db9e677b4
This revision can be installed: True
Times cloned / installed: 281
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bcftools 1.2 package
samtools 1.1 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
PHE SNP and indel caller 1.0 any

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA