Repository suite_mothur
Name: suite_mothur
Owner: iuc
Synopsis: A suite of tools designed to bring the mothur project into Galaxy.
The mothur project seeks to offers a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
We have incorporated the functionality of dotur, sons, treeclimber, s-libshuff, unifrac, and much more.
In addition to improving the flexibility of these algorithms, we have added a number of other features including calculators and visualization tools.
Content homepage: https://www.mothur.org
Type: repository_suite_definition
Revision: 14:1c726cc47ae6
This revision can be installed: True
Times cloned / installed: 3673
Dependencies of this repository

Repository mothur_get_oturep revision 305ce07a4b16 owned by iuc
Repository mothur_dist_shared revision f25598da7174 owned by iuc
Repository mothur_summary_seqs revision 609770e516fa owned by iuc
Repository mothur_make_lookup revision 23c1af22331b owned by iuc
Repository mothur_get_otulist revision 85f75125d861 owned by iuc
Repository mothur_phylotype revision 4d219b4dfd6a owned by iuc
Repository mothur_get_coremicrobiome revision da05ce41f8f0 owned by iuc
Repository mothur_indicator revision 1c6dadf7bc72 owned by iuc
Repository mothur_summary_qual revision 86a40294e149 owned by iuc
Repository mothur_count_groups revision 03c86648a52e owned by iuc
Repository mothur_filter_shared revision 2d1dbf69f589 owned by iuc
Repository mothur_collect_single revision c9d3eed082fc owned by iuc
Repository mothur_lefse revision ccd1ce71c11f owned by iuc
Repository mothur_cluster_split revision 1b7fd1678230 owned by iuc
Repository mothur_sort_seqs revision fc60d2e290a4 owned by iuc
Repository mothur_otu_association revision a02117aa58a5 owned by iuc
Repository mothur_venn revision 4db54b1c1d83 owned by iuc
Repository mothur_chimera_uchime revision 0706d327ecae owned by iuc
Repository mothur_pcr_seqs revision 7dba7376870c owned by iuc
Repository mothur_pca revision 46689a444f2b owned by iuc
Repository mothur_get_sabund revision c550ce2ebe1f owned by iuc
Repository mothur_deunique_tree revision d247213cebfc owned by iuc
Repository mothur_unifrac_unweighted revision 2933ee6251d8 owned by iuc
Repository mothur_consensus_seqs revision 6f281dc9d01c owned by iuc
Repository mothur_trim_flows revision 1fead600dbd4 owned by iuc
Repository mothur_filter_seqs revision 3524ca06478e owned by iuc
Repository mothur_make_fastq revision f09c0a3bf8b9 owned by iuc
Repository mothur_taxonomy_to_krona revision a97107cc4c93 owned by iuc
Repository mothur_summary_tax revision a7e1d78c70f5 owned by iuc
Repository mothur_align_check revision 2f668a63a256 owned by iuc
Repository mothur_get_rabund revision 4a52424269e1 owned by iuc
Repository mothur_remove_otulabels revision b9e2724e9fc7 owned by iuc
Repository mothur_dist_seqs revision 0554c9338ca0 owned by iuc
Repository mothur_remove_seqs revision 5097ac2cbfc3 owned by iuc
Repository mothur_merge_groups revision ddd068a49efe owned by iuc
Repository mothur_merge_sfffiles revision b562d71b9508 owned by iuc
Repository mothur_get_otulabels revision fbd1d5bf02bf owned by iuc
Repository mothur_remove_dists revision 56ad298415d8 owned by iuc
Repository mothur_chop_seqs revision e1dd67d13282 owned by iuc
Repository mothur_classify_tree revision 5d8809423177 owned by iuc
Repository mothur_heatmap_sim revision 7f5707dd6073 owned by iuc
Repository mothur_summary_shared revision 545234c1d925 owned by iuc
Repository mothur_list_otulabels revision 1c8906cc1ddd owned by iuc
Repository mothur_split_abund revision cd7b11709aa9 owned by iuc
Repository mothur_create_database revision 16f6d606521a owned by iuc
Repository mothur_remove_lineage revision 947faa8b3205 owned by iuc
Repository mothur_shhh_flows revision dfaf60f40e94 owned by iuc
Repository mothur_degap_seqs revision 6f08af23888a owned by iuc
Repository mothur_homova revision 89054fe2207f owned by iuc
Repository mothur_list_seqs revision dd84878a5f99 owned by iuc
Repository mothur_get_relabund revision 1593a3542944 owned by iuc
Repository mothur_sffinfo revision 09e3b0966a11 owned by iuc
Repository mothur_get_label revision ee13e5a4f9f3 owned by iuc
Repository mothur_chimera_ccode revision 751904c1033d owned by iuc
Repository mothur_corr_axes revision 03b02c255008 owned by iuc
Repository mothur_pre_cluster revision 05183ee20cf8 owned by iuc
Repository mothur_amova revision 58b8ae43d27f owned by iuc
Repository mothur_otu_hierarchy revision f9326e93f5c3 owned by iuc
Repository mothur_sub_sample revision 67cb43432196 owned by iuc
Repository mothur_make_contigs revision 4e9136c2c4c3 owned by iuc
Repository mothur_parse_list revision 408650f291f7 owned by iuc
Repository mothur_get_lineage revision 0bbfc05d924e owned by iuc
Repository mothur_unifrac_weighted revision 88c441e56578 owned by iuc
Repository mothur_sens_spec revision 5ff10ccd7100 owned by iuc
Repository mothur_chimera_slayer revision ab328c924a02 owned by iuc
Repository mothur_align_seqs revision abf7c15ecfef owned by iuc
Repository mothur_get_seqs revision f5cb275acba9 owned by iuc
Repository mothur_parsimony revision aff64115d95f owned by iuc
Repository mothur_heatmap_bin revision aeacbc9d5333 owned by iuc
Repository mothur_get_otus revision dbb1bc225df1 owned by iuc
Repository mothur_cluster_classic revision 9bae6b20ed44 owned by iuc
Repository mothur_metastats revision 19836a38dc20 owned by iuc
Repository mothur_normalize_shared revision 5e94c135ef00 owned by iuc
Repository mothur_make_group revision 37af7f0540e5 owned by iuc
Repository mothur_count_seqs revision 7a6f9c899221 owned by iuc
Repository mothur_classify_otu revision 02446d12c359 owned by iuc
Repository mothur_get_groups revision 03af14e245fb owned by iuc
Repository mothur_biom_info revision 31fa2d557ff2 owned by iuc
Repository mothur_cluster_fragments revision 08b0e9f01d65 owned by iuc
Repository mothur_chimera_vsearch revision de3cfb122105 owned by iuc
Repository mothur_deunique_seqs revision f6c604b2793e owned by iuc
Repository mothur_remove_rare revision 9ac808d4e0b5 owned by iuc
Repository mothur_merge_taxsummary revision 733bfc5872b1 owned by iuc
Repository mothur_nmds revision a81680d1db78 owned by iuc
Repository mothur_shhh_seqs revision d7e469b059da owned by iuc
Repository mothur_cooccurrence revision ffdcb7942343 owned by iuc
Repository mothur_merge_files revision 7bd37d6decd9 owned by iuc
Repository mothur_reverse_seqs revision 7378ce8fb5c1 owned by iuc
Repository mothur_phylo_diversity revision c76d9ea84d39 owned by iuc
Repository mothur_chimera_perseus revision 6db50600493e owned by iuc
Repository mothur_fastq_info revision a630c5167f5d owned by iuc
Repository mothur_libshuff revision 1cd0f3241d5b owned by iuc
Repository mothur_get_communitytype revision 10c5aa12a1d5 owned by iuc
Repository mothur_screen_seqs revision 63b74bfc8052 owned by iuc
Repository mothur_unique_seqs revision d466580cd706 owned by iuc
Repository mothur_make_shared revision 0851ae17c58e owned by iuc
Repository mothur_trim_seqs revision bf67e22a405f owned by iuc
Repository mothur_rarefaction_single revision af521db77c56 owned by iuc
Repository mothur_summary_single revision 2344ed181ae6 owned by iuc
Repository mothur_make_design revision 6ec3ec95ae68 owned by iuc
Repository mothur_make_biom revision 55e975c9a012 owned by iuc
Repository mothur_collect_shared revision 21a043c3ae00 owned by iuc
Repository mothur_pcoa revision 5bc3e30e1d9e owned by iuc
Repository mothur_chimera_bellerophon revision 14a7c1eca23d owned by iuc
Repository mothur_classify_seqs revision 09bf9e496c64 owned by iuc
Repository mothur_anosim revision 4a283edb151c owned by iuc
Repository mothur_rename_seqs revision 583af69719db owned by iuc
Repository mothur_make_sra revision 88fa82b36a72 owned by iuc
Repository mothur_remove_otus revision 0e73681a7cdc owned by iuc
Repository mothur_get_dists revision 10005fd5ad53 owned by iuc
Repository mothur_get_group revision 65d9f4688890 owned by iuc
Repository mothur_merge_count revision 6e3d1e4c9786 owned by iuc
Repository mothur_chimera_pintail revision 5f66e6f7f6c0 owned by iuc
Repository mothur_mimarks_attributes revision b9fe5cf8f2bc owned by iuc
Repository mothur_clearcut revision ad924a6328cc owned by iuc
Repository mothur_cluster revision 528f950d1044 owned by iuc
Repository mothur_bin_seqs revision 65000a433c3b owned by iuc
Repository mothur_tree_shared revision 43e2715e98c9 owned by iuc
Repository mothur_pairwise_seqs revision cfe04aa12a39 owned by iuc
Repository mothur_get_mimarkspackage revision 2d19319f528a owned by iuc
Repository mothur_mantel revision b0f1e033e18d owned by iuc
Repository mothur_primer_design revision 0b63f5faf6e5 owned by iuc
Repository mothur_make_lefse revision 470c067fc0a0 owned by iuc
Repository mothur_seq_error revision 5a7674ac2c59 owned by iuc
Repository mothur_rarefaction_shared revision 2175b62675ed owned by iuc
Repository mothur_chimera_check revision 74dfe7be1563 owned by iuc
Repository mothur_split_groups revision 618bf5d295e7 owned by iuc
Repository mothur_get_sharedseqs revision f8bf3dd4db47 owned by iuc
Repository mothur_remove_groups revision 498dc0671d9e owned by iuc

Categories
Metagenomics - Tools enabling the study of metagenomes