Repository paqmir_cut_fasta_identifiers
Name: paqmir_cut_fasta_identifiers
Owner: smarthey
Synopsis: Modifies the sequences headers in fasta file by removing all annotations located after the first space.
This tool is part of the workflow PAQmiR for the Prediction Annotation and Quantification of miRNA with miRDeep2.
This tool modifies the sequence headers by removing all data after the first space.
ex 1 : original id : >cel-mir-1 MI0000003 Caenorhabditis elegans 
       modified id : >cel-mir-1 
ex 2 : original id : >Chr4 length= 120829699
       modified id : >Chr4 
Content homepage: https://forgemia.inra.fr/sylvain.marthey/paqmir
Development repository: https://forgemia.inra.fr/sylvain.marthey/paqmir
Link to this repository: https://toolshed.g2.bx.psu.edu/view/smarthey/paqmir_cut_fasta_identifiers/d282d0e2e698
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/smarthey/paqmir_cut_fasta_identifiers
Type: unrestricted
Revision: 1:d282d0e2e698
This revision can be installed: True
Times cloned / installed: 108

Contents of this repository

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Name Description Version Minimum Galaxy Version
modifies the sequences headers in fasta file by removing all annotations located after the first space 1.0.0 16.01

Categories
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis